Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ping_2418PFAM: extracellular solute-binding protein, family 5; KEGG: rpa:RPA1473 possible peptide transport system substrate-binding protein. (544 aa)    
Predicted Functional Partners:
Ping_2419
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_4050 binding-protein-dependent transport systems inner membrane component.
 
 0.977
dppC
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1471 putative dipeptide ABC transporter (permease).
 
 
 0.971
Ping_2421
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: bja:blr3340 ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.909
Ping_2417
Allophanate hydrolase; PFAM: Amidase; KEGG: rpa:RPA1404 glutamyl-tRNA(Gln) amidotransferase subunit A.
 
     0.866
Ping_0563
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vfi:VF2517 dipeptide transport system permease protein DppB.
 
 0.815
Ping_2416
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: psb:Psyr_2268 regulatory protein, LysR:LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
 
     0.806
sapC
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ppr:PBPRA2443 putative peptide ABC transporter, permease protein.
 
  
 0.800
Ping_0564
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vfi:VF2516 dipeptide transport system permease protein DppC.
 
 0.779
Ping_0419
KEGG: gbe:GbCGDNIH1_1637 transcriptional regulators, LysR family.
  
     0.765
Ping_2193
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: plu:plu2588 peptide transport system permease protein SapB.
 
   
 0.746
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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