STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_2426PFAM: Amidase; KEGG: pat:Patl_2055 amidase; Belongs to the amidase family. (398 aa)    
Predicted Functional Partners:
Ping_2424
Serine--pyruvate transaminase; PFAM: aminotransferase, class V; KEGG: pat:Patl_2052 aminotransferase, class V.
 
  0.927
Ping_2939
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A; PFAM: Amidase; KEGG: pat:Patl_2055 amidase.
  
  
 
0.907
Ping_2423
KEGG: pat:Patl_2051 amidase, hydantoinase/carbamoylase family; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein.
 
     0.905
acyP
PFAM: acylphosphatase; KEGG: vvy:VV1550 acylphosphatase.
    
  0.902
Ping_0660
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
    
  0.901
Ping_0658
TIGRFAM: uncharacterized domain 1; phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: ecj:JW1391 predicted thioesterase.
     
  0.900
Ping_2425
Gamma-glutamyltransferase 2, Threonine peptidase, MEROPS family T03; PFAM: gamma-glutamyltranspeptidase; KEGG: vch:VCA0558 gamma-glutamyltranspeptidase, putative.
 
  
 0.885
Ping_2427
PFAM: Bile acid:sodium symporter; KEGG: transporter, putative.
       0.778
Ping_2428
PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pat:Patl_2057 transcriptional regulator, RpiR family.
 
     0.737
Ping_2432
PFAM: extracellular solute-binding protein, family 3; KEGG: ypn:YPN_0839 amino acid ABC transporter, periplasmic protein; TC 3.A.1.3.-; Belongs to the bacterial solute-binding protein 3 family.
 
     0.567
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.