STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_2427PFAM: Bile acid:sodium symporter; KEGG: transporter, putative. (335 aa)    
Predicted Functional Partners:
Ping_2425
Gamma-glutamyltransferase 2, Threonine peptidase, MEROPS family T03; PFAM: gamma-glutamyltranspeptidase; KEGG: vch:VCA0558 gamma-glutamyltranspeptidase, putative.
  
    0.787
Ping_2116
PFAM: Malate/L-lactate dehydrogenase; KEGG: pub:SAR11_0966 hypothetical oxidoreductase YiaK; Belongs to the LDH2/MDH2 oxidoreductase family.
   
    0.785
Ping_2424
Serine--pyruvate transaminase; PFAM: aminotransferase, class V; KEGG: pat:Patl_2052 aminotransferase, class V.
  
    0.783
Ping_2426
PFAM: Amidase; KEGG: pat:Patl_2055 amidase; Belongs to the amidase family.
       0.778
Ping_2423
KEGG: pat:Patl_2051 amidase, hydantoinase/carbamoylase family; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein.
       0.708
Ping_2428
PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pat:Patl_2057 transcriptional regulator, RpiR family.
       0.655
Ping_2430
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA3493 putative amino acid ABC transporter, permease protein; TC 3.A.1.3.-.
  
    0.514
Ping_2431
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: yps:YPTB0867 putative amino acid ABC transporter, permease protein; TC 3.A.1.3.-.
  
    0.508
Ping_3086
Quinoprotein glucose dehydrogenase; PFAM: Pyrrolo-quinoline quinone; KEGG: ilo:IL0790 glucose dehydrogenase.
  
     0.507
Ping_2429
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: yps:YPTB0869 putative amino acid ABC transporter, ATP-binding protein; TC 3.A.1.3.-.
       0.505
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.