Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ping_2508KEGG: vpa:VP2395 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (354 aa)    
Predicted Functional Partners:
Ping_2507
Transcriptional regulator, LacI family; PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: vpa:VP2396 LacI-family regulatory protein.
 
     0.547
Ping_2509
Carbohydrate ABC transporter membrane protein 1, CUT1 family; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sal:Sala_0750 binding-protein-dependent transport systems inner membrane component; TC 3.A.1.1.-.
       0.542
Ping_2510
Carbohydrate ABC transporter membrane protein 2, CUT1 family; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sal:Sala_0749 binding-protein-dependent transport systems inner membrane component; TC 3.A.1.1.-.
       0.542
Ping_3387
KEGG: sdn:Sden_3057 hypothetical protein.
  
     0.467
Ping_2506
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
     0.443
Ping_2748
PFAM: aminotransferase class-III; KEGG: vvu:VV21663 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
     0.432
Ping_2511
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; PFAM: extracellular solute-binding protein, family 1; KEGG: sal:Sala_0748 extracellular solute-binding protein, family 1; TC 3.A.1.1.-.
       0.424
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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