Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ping_2542KEGG: rde:RD1_3706 monooxygenase protein, putative. (603 aa)    
Predicted Functional Partners:
Ping_2541
TIGRFAM: acetoin reductases; PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: ilo:IL0792 acetoin(diacetyl) reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.689
Ping_1952
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: tko:TK2009 cobalt/zinc/cadmium cation efflux pump protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
  
    0.593
Ping_0471
PFAM: H+-transporting two-sector ATPase, gamma subunit; KEGG: rfr:Rfer_1169 H+-transporting two-sector ATPase, gamma subunit.
   
   0.538
atpG
ATP synthase F1 subcomplex gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
   
   0.538
Ping_0464
PFAM: H+-transporting two-sector ATPase, delta/epsilon subunit; KEGG: sfr:Sfri_3050 H+transporting two-sector ATPase, delta/epsilon subunit.
   
   0.527
atpC
ATP synthase F1 subcomplex epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.527
atpA1
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
   
   0.521
atpA2
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
   
   0.521
atpB
ATP synthase F0 subcomplex A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
    
   0.518
atpB-2
ATP synthase F0 subcomplex A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
    
   0.518
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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