Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ping_2594TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: pat:Patl_0934 TRAP transporter solute receptor, TAXI family. (310 aa)    
Predicted Functional Partners:
Ping_2595
TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pat:Patl_0933 TRAP transporter, 4TM/12TM fusion protein.
  
 0.986
Ping_1871
PFAM: protein of unknown function DUF112, transmembrane; KEGG: vpa:VP1653 putative tricarboxylic transport TctA.
  
   
 0.533
Ping_1392
PFAM: nucleoside recognition domain protein; KEGG: son:SO1245 hypothetical protein.
  
     0.427
Ping_1873
PFAM: Uncharacterized protein UPF0065; KEGG: ppr:PBPRA2754 putative tricarboxylic transport TctC.
  
   
 0.413
Ping_0887
PFAM: Citrate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vfi:VF0924 transport protein.
  
     0.409
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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