STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_2595TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pat:Patl_0933 TRAP transporter, 4TM/12TM fusion protein. (634 aa)    
Predicted Functional Partners:
Ping_2594
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: pat:Patl_0934 TRAP transporter solute receptor, TAXI family.
  
 0.986
Ping_1871
PFAM: protein of unknown function DUF112, transmembrane; KEGG: vpa:VP1653 putative tricarboxylic transport TctA.
  
   
 0.636
Ping_3544
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: hch:HCH_06432 TRAP-type C4-dicarboxylate transport system, large permease component.
  
     0.540
Ping_1392
PFAM: nucleoside recognition domain protein; KEGG: son:SO1245 hypothetical protein.
  
     0.414
Ping_1873
PFAM: Uncharacterized protein UPF0065; KEGG: ppr:PBPRA2754 putative tricarboxylic transport TctC.
  
     0.413
Ping_2033
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: cps:CPS_4914 C4-dicarboxylate transporter family protein, DctM subunit.
  
     0.407
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.