STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_2607PFAM: nitroreductase; KEGG: csa:Csal_0202 nitroreductase; Belongs to the flavin oxidoreductase frp family. (253 aa)    
Predicted Functional Partners:
Ping_3087
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: mca:MCA0639 NADH-dependent flavin oxidoreductase, Oye family.
  
 
 0.920
birA
biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
  
    0.788
Ping_0574
PFAM: ABC-2 type transporter; KEGG: vfi:VF2171 ABC transporter permease protein.
  
  
 0.775
Ping_1902
PFAM: Inosine/uridine-preferring nucleoside hydrolase; Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: psp:PSPPH_2471 inosine-uridine preferring nucleoside hydrolase; Belongs to the IUNH family.
  
 
 0.688
Ping_0189
O-succinylbenzoic acid--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: she:Shewmr4_3770 O-succinylbenzoate-CoA ligase.
   
 
 0.659
Ping_1014
PFAM: AMP-dependent synthetase and ligase; KEGG: ype:YPO2074 long-chain-fatty-acid-CoA ligase.
   
 
 0.659
Ping_1999
PFAM: AMP-dependent synthetase and ligase; KEGG: ppr:PBPRA1464 peptide synthase.
   
 
 0.659
Ping_1534
PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: mma:MM3105 putative cytosine deaminase.
 
    0.629
Ping_1402
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ppr:PBPRB0628 hypothetical fumarylacetoacetate hydrolase family protein.
 
  
 0.521
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
 
 0.503
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.