STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_2659SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: cya:CYA_2538 oxidoreductase, 2OG-Fe(II) oxygenase family. (299 aa)    
Predicted Functional Partners:
Ping_2657
PFAM: asparagine synthase; KEGG: mlo:mll5256 similar to asparagine synthetase.
   
   0.792
Ping_2658
KEGG: hch:HCH_01195 hypothetical protein.
       0.773
Ping_2660
KEGG: cpe:CPE0468 hypothetical protein.
       0.732
Ping_2661
Hpr(Ser) kinase/phosphatase; KEGG: cpe:CPE0467 hypothetical protein.
       0.627
Ping_2662
ABC transporter ATPase and inner membrane protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll5254 ABC transporter, ATP-binding protein.
       0.606
Ping_2663
KEGG: hch:HCH_01194 hypothetical protein.
       0.606
rpsL
SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.
   
 0.522
tuf
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
   0.514
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.