STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_2697PFAM: histone deacetylase superfamily; KEGG: cps:CPS_1655 histone deacetylase family protein. (307 aa)    
Predicted Functional Partners:
Ping_1791
PFAM: amine oxidase; KEGG: pha:PSHAa1280 hypothetical protein.
   
 0.890
Ping_0991
PFAM: Calcium-binding EF-hand-containing protein; KEGG: xcb:XC_3100 hypothetical protein.
    
 0.873
Ping_1247
KEGG: mxa:MXAN_2773 ATPase, AAA family; TIGRFAM: AAA family ATPase, CDC48 subfamily; PFAM: AAA ATPase VAT domain protein domain protein; AAA ATPase, central domain protein; cell division protein 48, CDC48, domain 2; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Belongs to the AAA ATPase family.
   
 0.857
Ping_2066
Hypothetical protein; KEGG: noc:Noc_1879 AAA ATPase.
   
 0.857
Ping_3413
Hypothetical protein.
   
 0.839
Ping_3414
KEGG: vch:VC1764 hypothetical protein.
   
 0.839
cobB
5,6-dimethylbenzimidazole phosphoribosyltransferase; PFAM: Silent information regulator protein Sir2; KEGG: vch:VC1509 nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase; Belongs to the sirtuin family. Class III subfamily.
    
 0.835
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
    
 0.816
Ping_3166
KEGG: vfi:VFA0235 glycerol uptake facilitator protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.806
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
   0.797
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.