STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_2734PFAM: UspA domain protein; KEGG: eci:UTI89_C0610 universal stress protein UspG. (141 aa)    
Predicted Functional Partners:
Ping_0648
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vvy:VV1580 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
     0.714
dctQ-5
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: vvy:VV1578 hypothetical protein.
  
     0.619
Ping_1387
PFAM: cytochrome c, class I; KEGG: sit:TM1040_1744 cytochrome c, class I.
  
    0.501
Ping_3545
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: hch:HCH_06433 TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.448
dctQ-3
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rde:RD1_0678 TRAP dicarboxylate transporter, DctQ subunit, putative.
  
     0.440
Ping_3097
PFAM: major facilitator superfamily MFS_1; KEGG: sit:TM1040_1598 twin-arginine translocation pathway signal.
  
     0.417
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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