Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ping_2742KEGG: vpa:VPA0241 hypothetical protein. (308 aa)    
Predicted Functional Partners:
Ping_2744
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vvu:VV21670 ABC-type Fe3+ transport system, permease component.
 
    0.782
Ping_2746
ABC transporter periplasmic substrate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: vvu:VV21665 ABC-type Fe3+ transport system, periplasmic component.
 
     0.730
Ping_2743
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: vvy:VVA0480 transcriptional regulator.
 
     0.623
phnX
Phosphonoacetaldehyde hydrolase; Involved in phosphonate degradation; Belongs to the HAD-like hydrolase superfamily. PhnX family.
 
     0.508
Ping_0553
Maltoporin; KEGG: vvy:VVA0142 maltoporin.
  
     0.507
Ping_2745
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vpa:VPA0238 ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.468
Ping_2149
PFAM: protein of unknown function DUF6, transmembrane; KEGG: vfi:VFA0117 transporter, drug/metabolite exporter family.
  
     0.447
Ping_0941
PFAM: DoxX family protein; KEGG: ppr:PBPRA3518 putative transmembrane protein.
  
 
   0.434
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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