STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_2845PFAM: outer membrane efflux protein; KEGG: cps:CPS_4326 outer membrane efflux protein. (447 aa)    
Predicted Functional Partners:
Ping_2843
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: cps:CPS_4324 type I secretion membrane fusion protein, HlyD family.
 
 
 0.981
Ping_2844
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_4325 ABC transporter, ATP-binding/permease protein.
 
  
 0.969
Ping_2846
PFAM: sulfotransferase; TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cps:CPS_4327 TPR domain protein.
 
    0.870
Ping_2847
KEGG: cps:CPS_4328 cadherin domain protein.
 
  
 0.786
Ping_1757
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sdn:Sden_2205 membrane-fusion protein.
  
 
 0.780
Ping_1846
PFAM: SMC domain protein; KEGG: cps:CPS_2616 hypothetical protein.
  
    0.727
Ping_1848
KEGG: cps:CPS_2618 hypothetical protein.
  
     0.721
Ping_1683
KEGG: cps:CPS_3105 hypothetical protein.
  
     0.719
Ping_3711
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: eba:ebA4062 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.641
Ping_2849
RTX toxin-like protein; KEGG: dps:DP2105 hypothetical protein.
 
  
 0.500
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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