STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_2958PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vfi:VFA1043 ABC transporter ATP-binding protein. (224 aa)    
Predicted Functional Partners:
Ping_2957
PFAM: protein of unknown function DUF214; KEGG: vfi:VFA1042 ABC transporter component, lysophospholipase L1 transport.
 
 
 
 0.981
Ping_2959
Arylesterase; PFAM: lipolytic enzyme, G-D-S-L family; KEGG: vfi:VFA1044 acyl-CoA thioesterase I.
 
 
   0.965
Ping_3708
ABC transporter permease protein; PFAM: protein of unknown function DUF214; KEGG: eba:ebA4058 putative ABC transporter protein.
     0.934
Ping_3709
ABC transporter permease protein; PFAM: protein of unknown function DUF214; KEGG: dar:Daro_3463 protein of unknown function DUF214.
     0.931
Ping_2195
KEGG: ppr:PBPRA2444 putative peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
    
0.834
rplL
LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
    
   0.830
Ping_1919
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vvy:VV0007 ABC-type amino acid transport system, permease component; TC 3.A.1.3.-.
 
      0.727
Ping_1769
ABC transporter ATP-binding protein, predicted for phosphonate; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdn:Sden_1898 ABC transporter related.
  
     0.717
dppC
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1471 putative dipeptide ABC transporter (permease).
 
      0.550
gcp
O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
     0.541
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.