Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ping_2986Amino acid/amide ABC transporter substrate-binding protein, HAAT family; KEGG: hch:HCH_04519 ABC-type branched-chain amino acid transport system, periplasmic component; TC 3.A.1.4.-. (425 aa)    
Predicted Functional Partners:
Ping_2988
PFAM: inner-membrane translocator; KEGG: abo:ABO_2511 branched-chain amino acid ABC transporter, permease protein; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.999
Ping_2987
PFAM: inner-membrane translocator; KEGG: abo:ABO_2510 branched-chain amino acid ABC transporter, permease protein; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.998
Ping_2990
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: abo:ABO_2513 amino acid ABC transporter, ATP-binding protein; TC 3.A.1.4.-.
 
 
 0.997
Ping_2989
PFAM: ABC transporter related; KEGG: psb:Psyr_4429 ABC transporter.
 
 
 0.993
ureD
Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
   
 0.850
ureE
UreE urease accessory domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
 
   
 0.813
ureF
Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
   
 0.812
Ping_0849
PFAM: monooxygenase, FAD-binding; KEGG: cps:CPS_3257 monooxygenase family protein.
   
  
 0.706
Ping_2417
Allophanate hydrolase; PFAM: Amidase; KEGG: rpa:RPA1404 glutamyl-tRNA(Gln) amidotransferase subunit A.
 
     0.640
Ping_2985
PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: abo:ABO_1986 two-component sensor histidine kinase protein, putative.
 
 
 
 0.622
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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