STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_3015PFAM: VacJ family lipoprotein; KEGG: son:SO3197 vacJ lipoprotein, putative. (256 aa)    
Predicted Functional Partners:
Ping_2884
ABC-type transporter periplasmic protein; PFAM: toluene tolerance family protein; KEGG: son:SO3951 hypothetical protein.
 
 
 
 0.959
Ping_2885
PFAM: Mammalian cell entry related domain protein; KEGG: vvy:VV0457 ABC-type transport system, periplasmic component.
 
   
 0.896
Ping_0666
PFAM: porin, Gram-negative type; KEGG: vpa:VPA0527 outer membrane protein N, non-specific porin.
   
 
 0.785
Ping_1474
PFAM: porin, Gram-negative type; KEGG: vvy:VV2720 outer membrane protein OmpU.
   
 
 0.785
Ping_3613
PFAM: porin, Gram-negative type; KEGG: vvu:VV20580 outer membrane protein.
   
 
 0.785
Ping_3019
TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: ppr:PBPRA0952 putative cytochrome c-type biogenesis protein CcmF.
 
   
 0.709
Ping_2886
ABC-type transporter inner membrane protein; PFAM: protein of unknown function DUF140; KEGG: ilo:IL0404 ABC-type transport system involved in resistance to organic solvents, permease component.
 
   
 0.655
Ping_1681
PFAM: protein of unknown function DUF140; KEGG: cje:Cj1646 putative ABC transport system permease protein.
     
 0.644
ccmE
CcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
 
     0.616
ccmC
Heme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
 
     0.614
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.