STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
pilTPilus retraction ATPase PilT; KEGG: cps:CPS_3662 twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase. (344 aa)    
Predicted Functional Partners:
Ping_3325
Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.902
Ping_0158
TIGRFAM: type IV pilus assembly protein PilM; KEGG: shm:Shewmr7_0242 type IV pilus assembly protein PilM.
 
   
 0.894
pilU
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pha:PSHAa2602 twitching motility protein PilU (type IV pili).
 
  
0.861
pilC
PFAM: type II secretion system protein; KEGG: shm:Shewmr7_3606 type II secretion system protein.
 
  
 0.842
Ping_0099
TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: shm:Shewmr7_0153 general secretion pathway protein F.
 
  
 0.838
Ping_0162
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: sdn:Sden_0260 type II and III secretion system protein.
 
   
 0.828
pilO
PFAM: Pilus assembly protein, PilO; KEGG: sdn:Sden_0258 pilus assembly protein, PilO.
 
  
 0.753
Ping_0159
PFAM: Fimbrial assembly family protein; KEGG: sfr:Sfri_0371 fimbrial assembly family protein.
 
  
 0.727
Ping_0899
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: pat:Patl_1779 DNA internalization-related competence protein ComEC/Rec2.
 
   
 0.678
Ping_3040
Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.672
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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