STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_3246KEGG: ppr:PBPRB0433 hypothetical protein. (135 aa)    
Predicted Functional Partners:
Ping_0107
PFAM: type II secretion system protein N; KEGG: ppr:PBPRA3471 hypothetical general secretion pathway protein N.
  
     0.690
Ping_0106
General secretion pathway M protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.664
Ping_0101
KEGG: cps:CPS_4587 general secretion pathway protein H.
  
     0.556
Ping_0829
PFAM: CreA family protein; KEGG: ppr:PBPRB0517 putative CreA protein.
  
     0.526
Ping_3245
KEGG: cbu:CBU_1466 hypothetical protein.
       0.510
Ping_1675
KEGG: cps:CPS_1176 hypothetical protein.
  
     0.496
Ping_0888
PFAM: Rhomboid family protein; KEGG: cps:CPS_2148 membrane protein, Rhomboid family.
  
     0.474
Ping_2718
KEGG: cps:CPS_1415 hypothetical protein.
  
     0.470
Ping_2694
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: vch:VC2621 extracellular nuclease-related protein.
  
     0.467
lptC
Hypothetical protein DUF1239; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
  
     0.465
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.