STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_3277TIGRFAM: lysyl-tRNA synthetase-related protein GenX; PFAM: tRNA synthetase, class II (D, K and N); KEGG: vpa:VP2838 lysyl-tRNA synthetase-related protein. (326 aa)    
Predicted Functional Partners:
efp
Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family.
 
 
 
 0.944
Ping_1470
TIGRFAM: elongation factor P-like protein YeiP; PFAM: Elongation factor P/YeiP protein; Elongation factor, KOW domain protein; KEGG: cps:CPS_1465 elongation factor P-like protein YeiP.
 
 
 
 0.884
Ping_3283
TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: vfi:VF2339 lysine 2,3-aminomutase.
 
  
 0.848
Ping_3276
Hypothetical protein.
       0.773
Ping_3137
ABC transporter ATP-binding protein; PFAM: protein of unknown function DUF462; KEGG: pat:Patl_3387 protein of unknown function DUF462.
  
   
 0.515
Ping_1482
PFAM: protein of unknown function DUF462; KEGG: vch:VC2113 hypothetical protein.
  
   
 0.502
Ping_3275
Hypothetical protein.
       0.498
Ping_3278
KEGG: vfi:VF2334 fumarate reductase flavoprotein subunit; TIGRFAM: fumarate reductase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
       0.427
Ping_3279
KEGG: cvi:CV3368 fumarate reductase, subunit B; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
       0.427
Ping_3280
PFAM: fumarate reductase, subunit C; KEGG: cvi:CV3367 fumarate reductase, subunit C.
     
 0.414
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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