STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ping_3283TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: vfi:VF2339 lysine 2,3-aminomutase. (337 aa)    
Predicted Functional Partners:
efp
Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family.
 
   
 0.874
Ping_3277
TIGRFAM: lysyl-tRNA synthetase-related protein GenX; PFAM: tRNA synthetase, class II (D, K and N); KEGG: vpa:VP2838 lysyl-tRNA synthetase-related protein.
 
  
 0.848
Ping_3137
ABC transporter ATP-binding protein; PFAM: protein of unknown function DUF462; KEGG: pat:Patl_3387 protein of unknown function DUF462.
  
   
 0.652
Ping_1482
PFAM: protein of unknown function DUF462; KEGG: vch:VC2113 hypothetical protein.
  
   
 0.649
Ping_3720
PFAM: MCP methyltransferase, CheR-type; KEGG: abo:ABO_1308 chemotaxis protein methyltransferase.
    
   0.533
Ping_3284
KEGG: pat:Patl_0438 hypothetical protein.
       0.526
Ping_1907
PFAM: GCN5-related N-acetyltransferase; KEGG: sat:SYN_02633 beta-lysine acetyltransferase.
    0.480
Ping_1840
PFAM: CheB methylesterase; MCP methyltransferase, CheR-type; KEGG: dar:Daro_2045 CheB methylesterase:MCP methyltransferase, CheR-type.
   
   0.448
Ping_3128
PFAM: CheB methylesterase; MCP methyltransferase, CheR-type; KEGG: dar:Daro_2045 CheB methylesterase:MCP methyltransferase, CheR-type.
   
   0.448
Ping_2549
KEGG: rfr:Rfer_2355 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase, CheR-type; PAS fold domain protein; SMART: PAS domain containing protein.
   
   0.443
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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