Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ping_3325Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (290 aa)    
Predicted Functional Partners:
pilT
Pilus retraction ATPase PilT; KEGG: cps:CPS_3662 twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
   
 0.902
pilC
PFAM: type II secretion system protein; KEGG: shm:Shewmr7_3606 type II secretion system protein.
 
  
 0.901
Ping_0099
TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: shm:Shewmr7_0153 general secretion pathway protein F.
 
  
 0.899
Ping_0480
TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: she:Shewmr4_0420 type IV-A pilus assembly ATPase PilB.
 
 
 0.889
Ping_0098
Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.887
Ping_0158
TIGRFAM: type IV pilus assembly protein PilM; KEGG: shm:Shewmr7_0242 type IV pilus assembly protein PilM.
 
  
 0.858
Ping_0899
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: pat:Patl_1779 DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.841
Ping_0100
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: sfr:Sfri_0108 general secretion pathway protein G.
 
  
 0.840
pilU
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pha:PSHAa2602 twitching motility protein PilU (type IV pili).
  
   
 0.824
Ping_0494
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: psb:Psyr_2906 pilus retraction protein PilT.
  
   
 0.822
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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