STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_3333PFAM: major facilitator superfamily MFS_1; KEGG: hch:HCH_03642 major facilitator superfamily protein. (568 aa)    
Predicted Functional Partners:
Ping_3334
TIGRFAM: diaminopimelate epimerase; KEGG: hch:HCH_03641 diaminopimelate epimerase; Belongs to the diaminopimelate epimerase family.
 
     0.923
Ping_3331
KEGG: hch:HCH_03644 ABC-type uncharacterized transport system, periplasmic component.
 
    0.903
Ping_3330
KEGG: hch:HCH_03645 ABC-type uncharacterized transport system, periplasmic component.
 
    0.881
Ping_0037
KEGG: hch:HCH_03644 ABC-type uncharacterized transport system, periplasmic component.
 
    0.791
Ping_3332
KEGG: hch:HCH_03643 hypothetical protein.
       0.773
Ping_3329
Hpt sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: hch:HCH_03646 signal transduction histidine kinase.
 
   
 0.635
Ping_3328
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: gsu:GSU1927 sensory box/response regulator.
       0.452
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.