STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_3340PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pca:Pcar_0454 TonB-dependent receptor, putative. (613 aa)    
Predicted Functional Partners:
Ping_3346
Outer membrane transport energization protein TonB; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: ppr:PBPRA2103 hypothetical TonB protein; TC 2.C.1.1.1.
   
 
 0.902
fecD
PFAM: transport system permease protein; KEGG: dra:DRB0015 putative hemin transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
   
 0.875
Ping_3341
Predicted Fe ABC transporter; PFAM: periplasmic binding protein; KEGG: vfi:VFA0973 ABC transporter, periplasmic component.
 
   
 0.860
Ping_3343
ABC transporter for cobalamin/Fe3+-siderophores ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mbu:Mbur_1545 ABC transporter, ATPase subunit.
 
   
 0.830
Ping_3344
Outer membrane transport energization protein ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: ava:Ava_2465 MotA/TolQ/ExbB proton channel; TC 2.C.1.1.1.
 
   
 0.693
Ping_3345
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: syf:Synpcc7942_2428 biopolymer transport ExbD like protein; TC 2.C.1.1.1.
 
   
 0.624
Ping_2393
Outer membrane transport energization protein ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: pat:Patl_2279 MotA/TolQ/ExbB proton channel; TC 2.C.1.1.1.
 
   
 0.609
Ping_0113
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
 
   
 0.589
tolQ
Cell division and transport-associated protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
   
 0.490
Ping_1681
PFAM: protein of unknown function DUF140; KEGG: cje:Cj1646 putative ABC transport system permease protein.
  
     0.471
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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