STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_3395PFAM: Alternative oxidase; KEGG: vfi:VF0578 alternative oxidase. (211 aa)    
Predicted Functional Partners:
Ping_1892
PFAM: lipase, class 3; KEGG: cps:CPS_2407 lipase family protein.
  
     0.591
ubiB
2-octaprenylphenol hydroxylase; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis.
   
 0.590
Ping_2852
2-octaprenylphenol hydroxylase; PFAM: ABC-1 domain protein; KEGG: pol:Bpro_5555 ABC-1.
   
 0.590
ubiG-2
3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
  
 0.551
Ping_2592
PFAM: protein of unknown function DUF323; Methyltransferase type 11; Methyltransferase type 12; KEGG: cps:CPS_0605 hypothetical protein.
  
 0.526
Ping_0254
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: par:Psyc_0419 hypothetical protein.
   
 0.487
cmoB
Putative methyltransferase; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs.
   
 0.487
ubiG
3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
   
 0.487
Ping_2134
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: vpa:VP0112 methyltransferase-related protein.
   
 0.487
Ping_2524
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO1409 hypothetical protein.
   
 0.487
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.