STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_3535PFAM: oxidoreductase domain protein; KEGG: vpa:VPA1281 oxidoreductase, Gfo/Idh/MocA family. (308 aa)    
Predicted Functional Partners:
Ping_1905
PFAM: protein of unknown function DUF480; KEGG: vvy:VVA1225 hypothetical protein; Belongs to the UPF0502 family.
 
    0.790
Ping_0452
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB3239 probable D-tagatose 3-epimerase.
  
  
 0.691
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: plu:plu3548 lysyl-tRNA synthetase (lysine--tRNA ligase); Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.590
Ping_0775
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: vfi:VF0184 CDP-4-dehydro-6-deoxy-D-glucose 3-dehydratase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.588
metN
D-methionine ABC transporter, ATPase subunit; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
   
   0.505
Ping_3534
KEGG: vfi:VFA0140 hypothetical protein.
       0.489
Ping_3536
TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: ppr:PBPRA2942 putative lipoprotein YaeC; Belongs to the nlpA lipoprotein family.
       0.483
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
 
 0.472
Ping_1716
NmrA family protein; PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: eca:ECA0923 hypothetical protein.
  
 
  0.449
Ping_1244
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: vvy:VVA1350 predicted dehydrogenase.
  
     0.448
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.