STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_3543Putative transcriptional regulator; KEGG: hch:HCH_06430 predicted transcription regulator, contains HTH domain (MarR family). (170 aa)    
Predicted Functional Partners:
Ping_3545
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: hch:HCH_06433 TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.930
Ping_3546
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: hch:HCH_06434 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
     0.866
Ping_3544
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: hch:HCH_06432 TRAP-type C4-dicarboxylate transport system, large permease component.
 
     0.827
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.