STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ping_3548PFAM: Allophanate hydrolase subunit 1; KEGG: ppr:PBPRA1282 hypothetical protein. (234 aa)    
Predicted Functional Partners:
Ping_3549
Urea amidolyase related protein; KEGG: vpa:VPA0875 putative carboxylase; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2.
 
 0.999
Ping_3547
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
 0.998
Ping_2230
PFAM: protein of unknown function DUF34; KEGG: ppr:PBPRA1042 hypothetical protein.
 
  
 0.880
Ping_2837
PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: son:SO0840 acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylase.
  
   0.743
Ping_3545
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: hch:HCH_06433 TRAP-type C4-dicarboxylate transport system, small permease component.
       0.417
Ping_3376
TIGRFAM: oxaloacetate decarboxylase alpha subunit; PFAM: biotin/lipoyl attachment domain-containing protein; pyruvate carboxyltransferase; Conserved carboxylase region; KEGG: vpa:VP2544 oxaloacetate decarboxylase, alpha subunit.
  
    0.414
Ping_3543
Putative transcriptional regulator; KEGG: hch:HCH_06430 predicted transcription regulator, contains HTH domain (MarR family).
       0.414
Ping_1718
KEGG: vfi:VFA1062 transporter, NRAMP family.
  
  
 0.405
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.