STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_3598PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: vpa:VPA0262 putative negative regulator of flagellin synthesis FlgM. (102 aa)    
Predicted Functional Partners:
Ping_3581
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; PFAM: sigma-70 region 2 domain protein; KEGG: sdn:Sden_3633 RNA polymerase sigma factor, FliA/WhiG.
    
  0.910
Ping_3599
Predicted ATPases involved in pili biogenesis, PilT; KEGG: vpa:VPA0261 putative flagella synthesis protein FlgN.
       0.773
Ping_3591
Hypothetical protein.
       0.523
Ping_3592
Surface presentation of antigens (SPOA) protein; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
       0.523
fliP
Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
       0.523
fliQ
Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.
       0.523
Ping_3595
Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.
       0.523
flhB
Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.
       0.523
Ping_3597
PFAM: type III secretion FHIPEP protein; KEGG: vpa:VPA1546 flagellar biosynthesis protein.
       0.523
Ping_3590
Hypothetical protein.
       0.459
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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