STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_3628PFAM: glutaredoxin; KEGG: son:SO2797 hypothetical protein. (118 aa)    
Predicted Functional Partners:
Ping_3627
PFAM: protein of unknown function DUF1289; KEGG: cps:CPS_0317 hypothetical protein.
  
    0.547
Ping_2719
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: vfi:VF0653 23S rRNA methyltransferase.
  
     0.526
rpoA1
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.522
rpoA2
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.522
Ping_1763
TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: son:SO3403 ribosomal subunit interface protein.
  
     0.500
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.485
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: plu:plu3548 lysyl-tRNA synthetase (lysine--tRNA ligase); Belongs to the class-II aminoacyl-tRNA synthetase family.
   
 0.435
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.415
purC
Phosphoribosylaminoimidazolesuccinocarboxamide synthase; PFAM: SAICAR synthetase; KEGG: ppr:PBPRA1469 putative phosphoribosylaminoimidazole-succinocar boxamide synthase.
  
   0.407
Ping_0107
PFAM: type II secretion system protein N; KEGG: ppr:PBPRA3471 hypothetical general secretion pathway protein N.
  
     0.401
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.