Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ping_3653PFAM: protein of unknown function DUF469; KEGG: vfi:VF1139 hypothetical protein. (121 aa)    
Predicted Functional Partners:
Ping_3228
PFAM: protein of unknown function DUF335, SprT; SMART: protein of unknown function SprT; KEGG: sdn:Sden_2972 protein of unknown function DUF335, SprT; Belongs to the SprT family.
  
   
 0.544
pyrI
Aspartate carbamoyltransferase, regulatory subunit; Involved in allosteric regulation of aspartate carbamoyltransferase.
   
    0.530
Ping_0955
PFAM: UspA domain protein; KEGG: vch:VC0076 universal stress protein A.
  
     0.508
Ping_0959
PFAM: UspA domain protein; KEGG: vch:VC0076 universal stress protein A.
  
     0.456
Ping_0368
PFAM: O-antigen polymerase; KEGG: ppr:PBPRA3291 hypothetical protein.
  
     0.451
Ping_2267
PFAM: 37kDa nucleoid-associated protein; KEGG: vvy:VV1167 nucleoid-associated protein.
  
     0.433
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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