Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ping_3660PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: psp:PSPPH_0442 malonate utilization transcriptional regulator. (306 aa)    
Predicted Functional Partners:
mdcB
Triphosphoribosyl-dephospho-CoA synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
 
     0.821
Ping_3656
PFAM: malonate decarboxylase gamma subunit; KEGG: mdcE; malonate decarboxylase, gamma subunit.
 
    0.816
Ping_3659
KEGG: pae:PA0208 malonate decarboxylase alpha subunit.
 
     0.800
mdcC
Acetyl-CoA carboxylase beta subunit-like protein; Subunit of malonate decarboxylase, it is an acyl carrier protein to which acetyl and malonyl thioester residues are bound via a 2'-(5''-phosphoribosyl)-3'-dephospho-CoA prosthetic group and turn over during the catalytic mechanism.
 
    0.795
Ping_3655
KEGG: aci:ACIAD1758 phosphoribosyl-dephospho-CoA transferase.
 
     0.787
Ping_2379
PFAM: regulatory protein, LysR; KEGG: vfi:VF2051 transcriptional regulators, LysR family.
  
     0.748
Ping_2801
PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_2850 substrate-binding transcriptional regulator, LysR family.
  
     0.743
Ping_2416
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: psb:Psyr_2268 regulatory protein, LysR:LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
  
     0.713
Ping_3497
Transcriptional regulator, substrate-binding, LysR family protein; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ppr:PBPRA0273 putative Hydrogen peroxide-inducible genes activator; Belongs to the LysR transcriptional regulatory family.
  
     0.698
Ping_1689
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cps:CPS_4691 substrate-binding transcriptional regulator, LysR family.
  
     0.693
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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