STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ping_3675PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rde:RD1_1478 C4-dicarboxylate transport system C4-dicarboxylate-binding protein, putative. (330 aa)    
Predicted Functional Partners:
Ping_3674
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rde:RD1_1477 hypothetical protein.
 
  
 0.919
Ping_0648
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vvy:VV1580 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
  
  0.916
Ping_2035
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: cps:CPS_4916 putative C4-dicarboxylate-binding periplasmic protein DctP.
  
  
  0.913
Ping_0135
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vpa:VPA1702 putative dicarboxylate-binding periplasmic protein.
  
  
 
0.909
Ping_3673
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rde:RD1_1476 TrapT family, DctM subunit, putative.
 
  
 0.906
Ping_3546
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: hch:HCH_06434 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
  
 
0.905
Ping_2933
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: hch:HCH_03539 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.
   
 
 0.902
Ping_3150
TRAP dicarboxylate transporter- DctP subunit; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
   
 
 0.902
Ping_0540
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vvy:VV1096 TRAP-type C4-dicarboxylate transport system, periplasmic component.
     
  0.900
Ping_0570
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: vch:VC1273 extracellular solute-binding protein, family 7.
     
  0.900
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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