Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ping_3683KEGG: tcx:Tcr_2091 hypothetical protein. (290 aa)    
Predicted Functional Partners:
Ping_3684
PFAM: beta-lactamase domain protein; KEGG: tcx:Tcr_2090 beta-lactamase-like.
 
     0.855
Ping_3688
ABC transporter for phosphonate ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tcx:Tcr_2086 ABC transporter related.
 
     0.788
Ping_3687
KEGG: tcx:Tcr_2087 ABC transporter related; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.783
phnN
Phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP).
       0.782
Ping_3686
TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: tcx:Tcr_2088 amidohydrolase-like.
       0.777
Ping_3689
Phosphonate metabolism PhnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
       0.757
Ping_3690
PFAM: phosphonate metabolism; KEGG: tcx:Tcr_2084 phosphonate metabolism.
       0.757
Ping_3691
PFAM: phosphonate metabolism; KEGG: tcx:Tcr_2083 phosphonate metabolism protein.
       0.757
Ping_3692
KEGG: tcx:Tcr_2082 putative PhnG protein.
       0.756
Ping_3693
TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tcx:Tcr_2081 phosphonate uptake transporter.
       0.731
Your Current Organism:
Psychromonas ingrahamii
NCBI taxonomy Id: 357804
Other names: P. ingrahamii 37, Psychromonas ingrahamii 37, Psychromonas ingrahamii str. 37, Psychromonas ingrahamii strain 37, gas vacuolate str. 37
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