STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABQ88510.1PFAM: transposase, IS4 family protein. (397 aa)    
Predicted Functional Partners:
ABQ89433.1
PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.
  
     0.756
ABQ88568.1
PFAM: peptidase C14, caspase catalytic subunit p20; Tetratricopeptide TPR_4.
  
     0.696
ABQ90135.1
TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR.
  
     0.657
ABQ89435.1
Hypothetical protein.
  
     0.618
ABQ92404.1
Hypothetical protein.
  
     0.611
ABQ90736.1
Hypothetical protein.
  
     0.596
ABQ92192.1
PFAM: GCN5-related N-acetyltransferase.
  
     0.588
vapC-2
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.493
ABQ91032.1
PFAM: glycosyl transferase, family 39; Tetratricopeptide TPR_2 repeat protein.
  
     0.483
ABQ91388.1
Hypothetical protein.
  
     0.474
Your Current Organism:
Roseiflexus sp. RS1
NCBI taxonomy Id: 357808
Other names: R. sp. RS-1, Roseiflexus sp. RS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.