STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABQ89170.1PFAM: cytochrome c-type biogenesis protein CcmB. (248 aa)    
Predicted Functional Partners:
ABQ89171.1
PFAM: cytochrome c assembly protein.
 
 0.999
ABQ89169.1
TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.998
ABQ91925.1
PFAM: cytochrome c assembly protein.
 
 0.998
ABQ89173.1
Hypothetical protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
 
 0.963
ABQ89174.1
PFAM: cytochrome c assembly protein.
 
  
 0.934
ABQ89172.1
Hypothetical protein.
       0.592
ABQ92795.1
Hypothetical protein.
  
     0.517
ABQ89175.1
PFAM: heat shock protein DnaJ domain protein.
     
 0.508
ABQ89652.1
PFAM: peptidase M50.
  
     0.461
ABQ90169.1
Hypothetical protein.
  
     0.431
Your Current Organism:
Roseiflexus sp. RS1
NCBI taxonomy Id: 357808
Other names: R. sp. RS-1, Roseiflexus sp. RS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.