STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABQ89223.1PFAM: protein of unknown function DUF59. (108 aa)    
Predicted Functional Partners:
ABQ89224.1
PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 0.774
ABQ89338.1
PFAM: protein of unknown function DUF59.
  
     0.757
ABQ89222.1
PFAM: Radical SAM domain protein.
       0.723
ABQ89127.1
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein.
 
    0.671
ABQ89135.1
PFAM: nitrogen-fixing NifU domain protein.
 
    0.659
ABQ91206.1
PFAM: protein of unknown function DUF59.
  
     0.650
ABQ89225.1
PFAM: SufBD protein.
     
 0.587
ABQ91334.1
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
  
  
 0.523
ABQ92239.1
PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase.
  
  
 0.469
ABQ92516.1
PFAM: MaoC domain protein dehydratase.
  
  
 0.452
Your Current Organism:
Roseiflexus sp. RS1
NCBI taxonomy Id: 357808
Other names: R. sp. RS-1, Roseiflexus sp. RS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.