STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABQ89313.1PFAM: protein of unknown function DUF323. (251 aa)    
Predicted Functional Partners:
ABQ89314.1
PFAM: SMC domain protein.
       0.615
ABQ91701.1
PFAM: sulfatase.
 
   0.550
ABQ89315.1
Biotin carboxylase-like protein.
       0.465
ABQ89312.1
Hypothetical protein.
       0.448
ABQ91107.1
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase N-terminal domain protein.
  
   0.447
ABQ91147.1
Hypothetical protein.
  
   0.447
ABQ91139.1
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase.
 
    0.412
ABQ90079.1
PFAM: YD repeat-containing protein.
  
    0.403
Your Current Organism:
Roseiflexus sp. RS1
NCBI taxonomy Id: 357808
Other names: R. sp. RS-1, Roseiflexus sp. RS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.