Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABQ89416.1PFAM: AMP-dependent synthetase and ligase. (521 aa)    
Predicted Functional Partners:
ABQ91273.1
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; XYPPX repeat-containing protein; phosphopantetheine-binding; KR.
  
 0.955
ABQ91958.1
acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
  
 
 0.816
ABQ91563.1
PFAM: AMP-dependent synthetase and ligase; Enoyl-CoA hydratase/isomerase; Alcohol dehydrogenase GroES domain protein.
  
 
 0.714
ABQ89045.1
PFAM: AMP-dependent synthetase and ligase.
 
 
0.697
ABQ92003.1
PFAM: AMP-dependent synthetase and ligase.
  
  
 
0.677
ABQ92943.1
PFAM: AMP-dependent synthetase and ligase.
  
  
 
0.665
ABQ88664.1
PFAM: AMP-dependent synthetase and ligase.
  
  
 
0.654
ABQ90466.1
PFAM: AMP-dependent synthetase and ligase.
  
  
 
0.646
ABQ90476.1
PFAM: AMP-dependent synthetase and ligase.
  
  
 
0.632
ABQ88751.1
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain.
  
 
  0.536
Your Current Organism:
Roseiflexus sp. RS1
NCBI taxonomy Id: 357808
Other names: R. sp. RS-1, Roseiflexus sp. RS-1
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