STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABQ89994.1PFAM: SEC-C motif domain protein. (286 aa)    
Predicted Functional Partners:
ABQ89993.1
Hypothetical protein.
       0.773
ABQ89995.1
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
       0.739
ABQ91324.1
Hypothetical protein.
  
     0.616
ABQ91554.1
Hypothetical protein.
  
     0.609
ABQ91074.1
Hypothetical protein.
  
     0.604
ABQ90230.1
Hypothetical protein.
  
     0.601
ABQ89682.1
Hypothetical protein.
  
     0.582
ABQ89716.1
AAA-4 family protein; PFAM: PHP C-terminal domain protein; AAA-4 family protein; SMART: phosphoesterase PHP domain protein.
 
     0.582
ABQ89553.1
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
 
     0.580
ABQ90419.1
Hypothetical protein.
  
     0.580
Your Current Organism:
Roseiflexus sp. RS1
NCBI taxonomy Id: 357808
Other names: R. sp. RS-1, Roseiflexus sp. RS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.