STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABQ90207.1PFAM: binding-protein-dependent transport systems inner membrane component. (217 aa)    
Predicted Functional Partners:
ABQ90206.1
PFAM: Substrate-binding region of ABC-type glycine betaine transport system.
 
 0.999
ABQ90205.1
PFAM: ABC transporter related; SMART: AAA ATPase.
 0.997
ABQ90204.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
  
 
0.973
ABQ90208.1
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain.
       0.773
purK
Phosphoribosylaminoimidazole carboxylase; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).
  
    0.663
ABQ90209.1
TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49.
       0.655
purE
Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
       0.655
ABQ90212.1
Peptidase C26; PFAM: glutamine amidotransferase class-I; peptidase C26.
       0.606
Your Current Organism:
Roseiflexus sp. RS1
NCBI taxonomy Id: 357808
Other names: R. sp. RS-1, Roseiflexus sp. RS-1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.