STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABQ90289.1Hypothetical protein. (101 aa)    
Predicted Functional Partners:
ABQ90290.1
Hypothetical protein.
 
     0.921
ABQ90133.1
PFAM: Cna B domain protein.
  
  
 0.687
ABQ91287.1
PFAM: protein of unknown function DUF323.
 
     0.637
ABQ92586.1
PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: Pyrrolo-quinoline quinone.
  
     0.605
ABQ91435.1
Hypothetical protein.
  
     0.560
ABQ90252.1
PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2.
  
    0.556
ABQ89531.1
SMART: LamG domain protein jellyroll fold domain protein.
  
     0.552
ABQ90254.1
TIGRFAM: CRISPR-associated CXXC_CXXC protein Cst1.
  
     0.551
ABQ90379.1
Hypothetical protein.
 
     0.549
ABQ89424.1
Transcriptional regulator, SARP family; PFAM: TPR repeat-containing protein; transcriptional activator domain; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
  
    0.541
Your Current Organism:
Roseiflexus sp. RS1
NCBI taxonomy Id: 357808
Other names: R. sp. RS-1, Roseiflexus sp. RS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.