ABQ90386.1 protein (Roseiflexus sp. RS1) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABQ90386.1

Hypothetical protein. (91 aa)

Predicted Functional Partners:

ABQ90385.1

0.759

ABQ91475.1

0.741

ABQ90383.1

0.488

ABQ90384.1

0.488

rph

0.418

Your Current Organism:

Roseiflexus sp. RS1

NCBI taxonomy Id: 357808
Other names: R. sp. RS-1, Roseiflexus sp. RS-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABQ90383.1	ABQ90384.1	RoseRS_1997	RoseRS_1998	Glycerate 2-kinase; PFAM: MOFRL domain protein.	TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F.	0.785
ABQ90383.1	ABQ90385.1	RoseRS_1997	RoseRS_1999	Glycerate 2-kinase; PFAM: MOFRL domain protein.	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.	0.613
ABQ90383.1	ABQ90386.1	RoseRS_1997	RoseRS_2000	Glycerate 2-kinase; PFAM: MOFRL domain protein.	Hypothetical protein.	0.488
ABQ90384.1	ABQ90383.1	RoseRS_1998	RoseRS_1997	TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F.	Glycerate 2-kinase; PFAM: MOFRL domain protein.	0.785
ABQ90384.1	ABQ90385.1	RoseRS_1998	RoseRS_1999	TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F.	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.	0.519
ABQ90384.1	ABQ90386.1	RoseRS_1998	RoseRS_2000	TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F.	Hypothetical protein.	0.488
ABQ90385.1	ABQ90383.1	RoseRS_1999	RoseRS_1997	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.	Glycerate 2-kinase; PFAM: MOFRL domain protein.	0.613
ABQ90385.1	ABQ90384.1	RoseRS_1999	RoseRS_1998	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.	TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F.	0.519
ABQ90385.1	ABQ90386.1	RoseRS_1999	RoseRS_2000	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.	Hypothetical protein.	0.759
ABQ90385.1	rph	RoseRS_1999	RoseRS_2001	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.	RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.444
ABQ90386.1	ABQ90383.1	RoseRS_2000	RoseRS_1997	Hypothetical protein.	Glycerate 2-kinase; PFAM: MOFRL domain protein.	0.488
ABQ90386.1	ABQ90384.1	RoseRS_2000	RoseRS_1998	Hypothetical protein.	TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F.	0.488
ABQ90386.1	ABQ90385.1	RoseRS_2000	RoseRS_1999	Hypothetical protein.	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.	0.759
ABQ90386.1	ABQ91475.1	RoseRS_2000	RoseRS_3112	Hypothetical protein.	TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; Proprotein convertase, P.	0.741
ABQ90386.1	rph	RoseRS_2000	RoseRS_2001	Hypothetical protein.	RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.418
ABQ91475.1	ABQ90386.1	RoseRS_3112	RoseRS_2000	TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; Proprotein convertase, P.	Hypothetical protein.	0.741
rph	ABQ90385.1	RoseRS_2001	RoseRS_1999	RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.	0.444
rph	ABQ90386.1	RoseRS_2001	RoseRS_2000	RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	Hypothetical protein.	0.418