Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABQ90397.1PFAM: CopG domain protein DNA-binding domain protein. (97 aa)    
Predicted Functional Partners:
ABQ91784.1
Hypothetical protein.
  
     0.629
ABQ90379.1
Hypothetical protein.
  
     0.617
ABQ90396.1
Hypothetical protein.
       0.584
ABQ90290.1
Hypothetical protein.
  
     0.580
ABQ91783.1
Hypothetical protein.
  
     0.574
ABQ89246.1
PFAM: protein of unknown function DUF497.
 
     0.564
ABQ88609.1
Hypothetical protein.
 
     0.557
ABQ89130.1
PFAM: protein of unknown function DUF497.
 
     0.548
ABQ90380.1
Hypothetical protein.
  
     0.520
ABQ91284.1
Hypothetical protein.
  
     0.498
Your Current Organism:
Roseiflexus sp. RS1
NCBI taxonomy Id: 357808
Other names: R. sp. RS-1, Roseiflexus sp. RS-1
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