STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABQ90828.1PFAM: peptidase C1A, papain; Cna B domain protein. (1202 aa)    
Predicted Functional Partners:
ABQ91846.1
TIGRFAM: citrate synthase I; PFAM: Citrate synthase; Belongs to the citrate synthase family.
    
   0.680
ABQ89104.1
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: RNA-processing protein, HAT helix repeating-containing protein; Tetratricopeptide domain protein.
 
 
   0.675
ABQ89077.1
Hypothetical protein.
  
     0.670
ABQ90012.1
Hypothetical protein.
  
     0.658
ABQ91375.1
PFAM: von Willebrand factor, type A.
 
   0.652
ABQ90810.1
PFAM: TPR repeat-containing protein; heat shock protein DnaJ domain protein; Tetratricopeptide TPR_2 repeat protein.
  
 
 0.649
ABQ89477.1
TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; Cna B domain protein.
  
     0.628
ABQ89001.1
Phospholipid-binding protein, PBP family; PFAM: PEBP family protein.
  
 
 0.621
ABQ92803.1
Hypothetical protein.
  
   
 0.615
ABQ90043.1
PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase.
   
 0.608
Your Current Organism:
Roseiflexus sp. RS1
NCBI taxonomy Id: 357808
Other names: R. sp. RS-1, Roseiflexus sp. RS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.