STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABQ91015.1PFAM: Lytic transglycosylase, catalytic; Tetratricopeptide TPR_4. (833 aa)    
Predicted Functional Partners:
ABQ90988.1
PFAM: protein of unknown function DUF177.
  
    0.746
ABQ90510.1
Hypothetical protein.
  
  
 0.713
ABQ89302.1
Ribosome assembly protein 4 (RSA4); PFAM: WD-40 repeat protein; SMP-30/Gluconolaconase/LRE domain protein.
  
  
 0.712
ABQ92662.1
Hypothetical protein.
 
  
 0.707
ABQ90023.1
PFAM: WD40 domain protein beta Propeller.
 
  
 0.679
ABQ91014.1
PFAM: protein of unknown function DUF820.
       0.675
ABQ88479.1
CheA signal transduction histidine kinase; PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein.
 
  
 0.674
ABQ89027.1
Hypothetical protein.
 
  
 0.667
ABQ89407.1
CheA signal transduction histidine kinase; PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Hpt domain protein.
 
  
 0.665
ABQ91982.1
PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase.
 
   
 0.646
Your Current Organism:
Roseiflexus sp. RS1
NCBI taxonomy Id: 357808
Other names: R. sp. RS-1, Roseiflexus sp. RS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.