STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABQ91114.1Agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family. (348 aa)    
Predicted Functional Partners:
ABQ91113.1
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
 0.999
ABQ91208.1
PFAM: Orn/DAP/Arg decarboxylase 2.
    
 0.928
ABQ91371.1
Agmatinase; TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
    
 0.916
ABQ90435.1
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
  
 0.829
ABQ89885.1
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
  
     0.729
ABQ91110.1
PFAM: beta-lactamase domain protein.
  
  
 0.687
ABQ91111.1
Membrane protein-like protein.
  
    0.687
ABQ91112.1
PFAM: protein of unknown function DUF820.
       0.672
ABQ88868.1
TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; Belongs to the NadC/ModD family.
   
    0.422
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
  
 0.408
Your Current Organism:
Roseiflexus sp. RS1
NCBI taxonomy Id: 357808
Other names: R. sp. RS-1, Roseiflexus sp. RS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.