STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABQ91750.1PFAM: Radical SAM domain protein. (800 aa)    
Predicted Functional Partners:
ABQ91751.1
PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; SMART: Armadillo domain protein.
 
    0.805
ABQ91753.1
PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; SMART: Armadillo domain protein.
 
    0.789
ABQ91701.1
PFAM: sulfatase.
 
 
 0.752
ABQ91752.1
Hypothetical protein.
       0.727
ABQ91107.1
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase N-terminal domain protein.
  
 
 0.709
ABQ91147.1
Hypothetical protein.
  
 
 0.709
ABQ89620.1
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
  
  
 0.493
ABQ89139.1
PFAM: UBA/THIF-type NAD/FAD binding protein; Rhodanese domain protein; MoeZ/MoeB domain protein.
  
  
 0.487
moaA
GTP cyclohydrolase subunit MoaA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
     
0.469
ABQ92228.1
Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.469
Your Current Organism:
Roseiflexus sp. RS1
NCBI taxonomy Id: 357808
Other names: R. sp. RS-1, Roseiflexus sp. RS-1
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