STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABQ92423.1PFAM: conserved hypothetical protein 374. (347 aa)    
Predicted Functional Partners:
ABQ92424.1
PFAM: Methyltransferase type 11; Methyltransferase type 12.
 
     0.830
ABQ92425.1
PFAM: glycosyl transferase, family 2.
  
    0.668
ABQ92426.1
Hypothetical protein.
       0.656
ABQ92419.1
PFAM: glycosyl transferase, group 1.
  
    0.632
ABQ92421.1
PFAM: Nucleotidyl transferase.
       0.625
ABQ92420.1
PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase.
       0.623
ABQ92422.1
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain.
       0.623
ABQ88529.1
PFAM: amine oxidase; FAD dependent oxidoreductase.
 
    0.570
ABQ92427.1
PFAM: transposase, IS4 family protein; this transposase is present in multiple copies in the genome; each copy contains a frameshift at the sequence CCCCCCTTTTT and 7 copies of repeat with repeat unit SCEEP; pfam01609 is interrupted by this repeat, however it is restored upon the removal of repetitive sequence.
       0.480
ABQ89540.1
PFAM: amine oxidase; FAD dependent oxidoreductase.
 
    0.467
Your Current Organism:
Roseiflexus sp. RS1
NCBI taxonomy Id: 357808
Other names: R. sp. RS-1, Roseiflexus sp. RS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.