STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0031KEGG: cth:Cthe_1340 hypothetical protein. (324 aa)    
Predicted Functional Partners:
Cphy_0034
Hypothetical protein; KEGG: cth:Cthe_1337 type II secretion system protein.
 
  
 0.968
Cphy_0033
KEGG: cth:Cthe_1338 Flp pilus assembly protein TadB-like protein.
 
  
 0.943
Cphy_0037
Hypothetical protein.
 
  
 0.934
Cphy_0038
PFAM: peptidase A24A prepilin type IV; KEGG: cth:Cthe_1335 peptidase A24A, prepilin type IV.
 
  
 0.887
Cphy_0032
PFAM: type II secretion system protein E; KEGG: cth:Cthe_1339 type II secretion system protein E.
 
  
 0.825
Cphy_0834
Hypothetical protein.
  
  
 0.823
Cphy_2478
PFAM: Septum formation initiator.
  
     0.769
Cphy_2296
Hypothetical protein.
  
     0.754
Cphy_3931
Hypothetical protein.
  
     0.748
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.728
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.