STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0036Hypothetical protein; KEGG: cth:Cthe_1829 chromosome segregation ATPases-like protein. (827 aa)    
Predicted Functional Partners:
Cphy_0034
Hypothetical protein; KEGG: cth:Cthe_1337 type II secretion system protein.
 
   
 0.923
Cphy_0037
Hypothetical protein.
 
     0.912
Cphy_0033
KEGG: cth:Cthe_1338 Flp pilus assembly protein TadB-like protein.
 
  
 0.853
Cphy_3883
Hypothetical protein; KEGG: tva:TVAG_244940 viral A-type inclusion protein, putative Pfam: DUF2013 Spectrin DUF1945 EzrA Vicilin_N Myosin_tail_1 ATG16 HrpB7 Tektin DUF869 KAR9 Pox_A_type_inc Prefoldin_2 Rad50_zn_hook Hemerythrin Filament Microtub_assoc SF-assemblin Apolipoprotein MpPF2 BRE1 Phage_GP20 PROSITE: GLU_RICH.
 
 
 0.794
Cphy_0040
PFAM: Forkhead-associated protein; KEGG: cth:Cthe_1334 FHA domain containing protein.
 
   
 0.792
Cphy_3475
PFAM: Ig domain protein group 2 domain protein; KEGG: dsy:DSY0726 hypothetical protein.
 
 
 0.786
Cphy_0459
Hypothetical protein.
  
   
 0.769
Cphy_0457
Hypothetical protein.
  
     0.762
Cphy_0458
Hypothetical protein.
  
     0.762
Cphy_3722
Hypothetical protein.
  
     0.757
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.